corrected reattempt on nonexistent files, added version selection

src/main/java/org/mustangproject/toecount/Toecount.java

@@ -1,17 +1,17 @@
 package org.mustangproject.toecount;
 
+/***
+ * This is the command line interface to mustangproject
+ * 
+ */
+
 import java.io.BufferedReader;
 import java.io.File;
 import java.io.IOException;
 import java.io.InputStreamReader;
-import java.nio.charset.StandardCharsets;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.nio.file.Paths;
-import java.util.regex.Pattern;
-
-import javax.xml.bind.JAXBException;
-import javax.xml.transform.TransformerException;
 
 import org.mustangproject.ZUGFeRD.ZUGFeRDExporter;
 import org.mustangproject.ZUGFeRD.ZUGFeRDExporterFromA1Factory;
@@ -41,15 +41,58 @@ public class Toecount {
 				+ "\t--listfromstdin=count ZUGFeRD files from a list of linefeed separated files on runtime.\r\n"
 				+ "\t\tIt will start once a blank line has been entered.\r\n"
 				+ "\t--ignorefileextension=if PDF files are counted check *.* instead of *.pdf files"
-				+ "Merge operations"
+				+ "Merge operations" + "\t--combine= combine XML and PDF file to ZUGFeRD PDF file\r\n"
-				+ "\t--combine= combine XML and PDF file to ZUGFeRD PDF file\r\n"
 				+ "\t--extract= extract ZUGFeRD PDF to XML file\r\n"
 				+ "\t--upgrade= upgrade ZUGFeRD XML to ZUGFeRD 2 XML\r\n"
-				+ "\t--a3only= upgrade from PDF/A1 to A3 only \r\n"
+				+ "\t--a3only= upgrade from PDF/A1 to A3 only (no ZUGFeRD data attached) \r\n"
 
 				);
 	}
 
+	/***
+	 * Asks the user for a String (offering a defaultValue) conforming to a Regex
+	 * pattern
+	 * 
+	 * @param prompt
+	 * @param defaultValue
+	 * @param pattern
+	 * @return
+	 * @throws Exception
+	 */
+	protected static String getStringFromUser(String prompt, String defaultValue, String pattern) throws Exception {
+		String input = "";
+		if (!defaultValue.matches(pattern)) {
+			throw new Exception("Default value must match pattern");
+		}
+		boolean firstInput = true;
+		do {
+			// for a more sophisticated dialogue maybe https://github.com/mabe02/lanterna/
+			// could be taken into account
+			System.out.print(prompt + " (default: " + defaultValue + ")");
+			if (!firstInput) {
+				System.out.print("\n(allowed pattern: " + pattern + ")");
+
+			}
+			System.out.print(":");
+			BufferedReader buffer = new BufferedReader(new InputStreamReader(System.in));
+			try {
+				input = buffer.readLine();
+			} catch (IOException e) {
+				// TODO Auto-generated catch block
+				e.printStackTrace();
+			}
+
+			if (input.isEmpty()) {
+				// pressed return without entering anything
+				input = defaultValue;
+			}
+
+			firstInput = false;
+		} while (!input.matches(pattern));
+
+		return input;
+	}
+
 	/***
 	 * Prompts the user for a input or output filename
 	 * @param prompt
@@ -80,6 +123,7 @@ public class Toecount {
 				selectedName = defaultFilename;
 			}
 
+			// error cases
 			if (!selectedName.toLowerCase().endsWith(expectedExtension.toLowerCase())) {
 				System.err.println("Expected "+expectedExtension+" extension, this may corrupt your file. Do you still want to continue?(Y|N)");
 				String selectedAnswer="";
@@ -94,20 +138,18 @@ public class Toecount {
 					System.exit(-1);
 				}
 
-			}
+			} else if (ensureFileExists) {
-
-			if (ensureFileExists) {
 				File f = new File(selectedName);
 				if (f.exists()) {
 					fileExistenceOK = true;
 				} else {
 					System.out.println("File does not exist, try again or CTRL+C to cancel");
 					// discard the input, a scanner.reset is not sufficient
-				    
+					fileExistenceOK = false;
 				}			
 			} else {
 				fileExistenceOK=true;
-			}
+
 				if (ensureFileNotExists) {
 					File f = new File(selectedName);
 					if (f.exists()) {
@@ -119,6 +161,7 @@ public class Toecount {
 				} else {
 					fileExistenceOK=true;
 				}
+			}
 
 
 		} while (!fileExistenceOK);
@@ -228,9 +271,21 @@ public class Toecount {
 					pdfName = getFilenameFromUser("Source PDF", "invoice.pdf", "pdf", true, false);
 					xmlName = getFilenameFromUser("ZUGFeRD XML", "ZUGFeRD-invoice.xml", "xml", true, false);
 					outName = getFilenameFromUser("Ouput PDF", "invoice.ZUGFeRD.pdf", "pdf", false, true);
+					String versionInput = "";
+					try {
+						versionInput = getStringFromUser("ZUGFeRD version", "1", "1|2");
+						
+					} catch (Exception e) {
+						// TODO Auto-generated catch block
+						e.printStackTrace();
+					}
+					// get version
+					// get profile
 
 					ZUGFeRDExporter ze = new ZUGFeRDExporterFromA3Factory().setProducer("Toecount")
 							.setCreator(System.getProperty("user.name")).load(pdfName);
+					ze.setZUGFeRDVersion(Integer.valueOf(versionInput));
+				
 					ze.setZUGFeRDXMLData(Files.readAllBytes(Paths.get(xmlName)));
 
 					ze.export(outName);
@@ -265,8 +320,7 @@ public class Toecount {
 					pdfName = getFilenameFromUser("Source PDF", "invoice.pdf", "pdf", true, false);
 					outName = getFilenameFromUser("Target PDF", "invoice.a3.pdf", "pdf", false, true);
 
-				ZUGFeRDExporter ze = new ZUGFeRDExporterFromA1Factory().setAttachZUGFeRDHeaders(false)
+					ZUGFeRDExporter ze = new ZUGFeRDExporterFromA1Factory().setAttachZUGFeRDHeaders(false).load(pdfName);
-						.load(pdfName);
 
 					ze.export(outName);
 				} catch (IOException e) {